The 1800 VTX does not use an O2 sensor in a loop system to determine the A/F ratio and therefore CAN NOT alter the fuel curve due to a change in the air flow as a result of change in pipes, air cleaner, ect... Some bikes use an O2 sensor the VTX does not. Bikes that have them can compensate (to a small degree) for small air flow changes but pipes and air cleaner mods generally require a fuel curve altering device like a Power Commander, Bazzaz or a Fuel Nanny to make them run thier best.
I have yet to put a fuel controller on my 1800C, so I when changed the air cleaner and pipes on my bike, it ran much better at mid and WOT points, but that was because the OEM fuel curve is very fat (rich) at those points. Adding the extra air helped to make more power at those points , but the OEM fuel curve is also very lean at idle and part throttle settings, so at idle and part throttle openings the extra air hurts it at those throttle points.